夏雨
副教授（研究员）
xiay@sustech.edu.cn
基本概况：
夏雨博士毕业于香港大学。研究方向集中于： 利用新一代测序技术与生物信息学大数据分析相结合的手段研究环境微生物群落组成和协同作用关系对（1）生物处理技术运行效率; (2) 致病菌的环境分布以及抗生素抗性基因在环境中的迁移转化; （3）环境物质循环的驱动机理和生态效应,的影响。 已在The ISME Journal, Environmental Microbiology, Biotechnology for Biofuels, Environmental Science & Technology 等重要期刊发表SCI论文20余篇。 曾担任美国微生物协会香港地区青年大使以及香港大学研究生协会常务秘书长。
目前任职：
南方科技大学环境科学与工程学院，副教授
教育背景：
2009-2013：香港大学，环境工程专业，博士
2004-2008：大连理工大学，环境工程专业，学士
工作经历：
2024.06-至今：南方科技大学，环境科学与工程学院，副教授
2017.10-2024.05：南方科技大学，环境科学与工程学院，助理教授（副研究员）
2013-2016：香港大学，工程学院，博士后
获奖情况及荣誉：
2013-2016：美国微生物协会香港地区青年大使
2010：香港大学，土木工程学院，优秀助教奖
2008：大连市优秀毕业生
学术兼职：
2014-至今：国际学术刊物 《Frontiers in Energy Research》 编委
研究领域：
1） 针对高通量测序构建的宏基因组生物的生物信息学大数据分析
2） 厌氧消化等，生物能源生产中的微生物分子生物学
3） 脱氮除磷等，废水生物处理技术中的微生物生态学
4） 抗性基因等，新型环境污染物在环境中的迁移转化
1） 针对高通量测序构建的宏基因组生物的生物信息学大数据分析
2） 厌氧消化等，生物能源生产中的微生物分子生物学
3） 脱氮除磷等，废水生物处理技术中的微生物生态学
4） 抗性基因等，新型环境污染物在环境中的迁移转化
1.环境微生物学
2.生物信息在环境中的应用
发表论著：
2017
[1] Yu Xia†, An-Dong Li†, Yu Deng, Xiao-Tao Jiang, Li-Guan Li and Tong Zhang*. 2017. MinION nanopore sequencing enables correlation between resistome phenotype and genotype of coliform bacteria in municipal sewage. Frontiers in Microbiology. In press
[2] Yulin Wang, Liping Ma, Yanping Mao, Xiaotao Jiang, Yu Xia, Ke Yu, Bing Li, Tong Zhang*. 2017. Comammox in drinking water systems. Water Research. 116:332-341.
2016
[3] Jian-Qiang Su†, Yu Xia† (Co-first author), Huai-Ying Yao, Ya-Ying Li, Xin-Li An, Brajesh K. Singh, Tong Zhang*, Yong-Guan Zhu*. 2016. Metagenomic assembly unravel microbial response to redox fluctuation in acid sulfate soil. Soil Biology & Biochemistry. 105:244-252.
[4] Li-Guan Li†, Yu Xia† (Co-first author), Tong Zhang*. 2016. Co-occurrence of antibiotic and metal resistance genes revealed in complete genome collection. The ISME Journal. 11(3):651-662.
[5] Chao Yang†, Yu Xia† (Co-first author), Hong Qu, An-Dong Li, Ruihua Liu, Yubo Wang, Tong Zhang*. 2016. Discovery of new cellulases from the metagenome by a metagenomics-guided strategy. Biotechnology for Biofuels. 9: 138
[6] Yu Xia, Yubo Wang, Yi Wang, Francis Y.L. Chin, Tong Zhang*. 2016. Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation. Biotechnology for Biofuels. 9:111.
[7] Liping Ma, Yu Xia, Bing Li, Ying Yang, Liguan Li, James Tiedje, Tong Zhang*. 2016. Metagenomic assembly reveals hosts of antibiotic resistance genes and the shared resistome in pig, chicken and human feces. Environmental Science & Technology. 50:420-427.
[8] Feng Ju, Yubo Wang, Frankie T.K. Lau, W.C. Fung, Danping Huang, Yu Xia, Tong Zhang*. 2016. Anaerobic digestion of chemically enhanced primary treatment (CEPT) sludge and the microbial community structure. Applied Microbiology and Biotechnology. 100:8975-8982.
2015
[9] Yu Xia, Francis Y.L. Chin, Yuanqing Chao, Tong Zhang*. 2015. Phylogeny-structured carbohydrate metabolism across microbiomes collected from different units of wastewater treatment process Biotechnology for Biofuels. 8:1-12.
[10] Yu Xia, Yubo Wang, Herbert H.P. Fang, Tao Jin, Huanzhi Zhong, Tong Zhang*. 2015. Thermophilic microbial cellulose decomposition and methanogenesis pathways recharacterized by metatranscriptomic and metagenomic analysis. Scientific Reports. 4: 6708.
[11] Yubo Wang, Yu Xia, Feng Ju, Tong Zhang*. 2015. Metagenome approaches revealed a biological prospect for improvement on mesophilic cellulose degradation. Applied Microbiology and Biotechnology. 99:10871-10879.
2014
[12] Yanping Mao, Yu Xia, Zhiping Wang, Tong Zhang*. 2014. Reconstructing a Thauera genome from a hydrogenotrophic-denitrifying consortium using metagenomic sequence data. Applied Microbiology and Biotechnology. 98: 6885-6895.
[13] Feng Ju, Yu Xia, Feng Guo, Zhiping Wang, and Tong Zhang*. 2014. Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants. Environmental Microbiology. 16: 2421-2432.
[14] Ying Yang, Ke Yu, Yu Xia, Frankie T.K. Lau, Daniel T.W. Tang, Wingcheong Fung, Herbert H.P. Fang, Tong Zhang*. 2014. Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants. Applied Microbiology and Biotechnology. 98(12): 1-10.
[15] Yanping Mao, Ke Yu, Yu Xia, Yuanqing Chao, Tong Zhang*. 2014. Genome reconstruction and gene expression of 'Candidatus Accumulibacter phosphatis' Clade IB performing biological phosphorus removal. Environmental Science & Technology. 48:10363-71.
[16] Zhiping Wang, Feng Guo, Yanping Mao, Yu Xia, Tong Zhang*. 2014. Metabolic characteristics of a glycogen accumulating organism in Defluviicoccus cluster II revealed by comparative genomics. Microbial Ecology. 68:716-728.
2013
[17] Yu Xia, Herbert H.P. Fang, and Tong Zhang*. 2013. Recent Studies on Thermophilic anaerobic bioconversion of lignocellulosic biomass. RSC Advances. 3:15528-15542.
[18] Yu Xia, Feng Ju, Herbert H. P. Fang, and Tong Zhang*. 2013. Mining of novel thermo-stable cellulolytic genes from a thermophilic cellulose-degrading consortium by metagenomics. PLoS ONE. 8: e53779.
[19] Yanping Mao, Yu Xia, Tong Zhang*. 2013. Characterization of Thauera-dominated hydrogen-oxidizing autotrophic denitrifying microbial communities by using high-throughput sequencing. Bioresource Technology. 128:703-710.
[20] Feng Ju, Feng Guo, Lin Ye, Yu Xia, and Tong Zhang*. 2013. Metagenomic analysis on seasonal microbial variations of activated sludge from a full-Scale wastewater treatment plant over 4 years. Environmental Microbiology Reports 5(5):80-89.
2012
[21] Yu Xia, Lin Cai, Tong Zhang*, and Herbert H.P. Fang. 2012. Effects of substrate loading and co-substrates on thermophilic anaerobic conversion of microcrystalline cellulose and microbial communities revealed using high-throughput sequencing. International Journal of Hydrogen Energy. 37: 13652-13659.
[22] Yu Xia, Tong Zhang*, and Herbert H.P. Fang. 2012. Thermophilic anaerobic degradation of microcrystalline cellulose using mixed culture enriched from anaerobic digestion sludge. Procedia Environmental Sciences. 12: 3-8.
2017
[1] Yu Xia†, An-Dong Li†, Yu Deng, Xiao-Tao Jiang, Li-Guan Li and Tong Zhang*. 2017. MinION nanopore sequencing enables correlation between resistome phenotype and genotype of coliform bacteria in municipal sewage. Frontiers in Microbiology. In press
[2] Yulin Wang, Liping Ma, Yanping Mao, Xiaotao Jiang, Yu Xia, Ke Yu, Bing Li, Tong Zhang*. 2017. Comammox in drinking water systems. Water Research. 116:332-341.
2016
[3] Jian-Qiang Su†, Yu Xia† (Co-first author), Huai-Ying Yao, Ya-Ying Li, Xin-Li An, Brajesh K. Singh, Tong Zhang*, Yong-Guan Zhu*. 2016. Metagenomic assembly unravel microbial response to redox fluctuation in acid sulfate soil. Soil Biology & Biochemistry. 105:244-252.
[4] Li-Guan Li†, Yu Xia† (Co-first author), Tong Zhang*. 2016. Co-occurrence of antibiotic and metal resistance genes revealed in complete genome collection. The ISME Journal. 11(3):651-662.
[5] Chao Yang†, Yu Xia† (Co-first author), Hong Qu, An-Dong Li, Ruihua Liu, Yubo Wang, Tong Zhang*. 2016. Discovery of new cellulases from the metagenome by a metagenomics-guided strategy. Biotechnology for Biofuels. 9: 138
[6] Yu Xia, Yubo Wang, Yi Wang, Francis Y.L. Chin, Tong Zhang*. 2016. Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation. Biotechnology for Biofuels. 9:111.
[7] Liping Ma, Yu Xia, Bing Li, Ying Yang, Liguan Li, James Tiedje, Tong Zhang*. 2016. Metagenomic assembly reveals hosts of antibiotic resistance genes and the shared resistome in pig, chicken and human feces. Environmental Science & Technology. 50:420-427.
[8] Feng Ju, Yubo Wang, Frankie T.K. Lau, W.C. Fung, Danping Huang, Yu Xia, Tong Zhang*. 2016. Anaerobic digestion of chemically enhanced primary treatment (CEPT) sludge and the microbial community structure. Applied Microbiology and Biotechnology. 100:8975-8982.
2015
[9] Yu Xia, Francis Y.L. Chin, Yuanqing Chao, Tong Zhang*. 2015. Phylogeny-structured carbohydrate metabolism across microbiomes collected from different units of wastewater treatment process Biotechnology for Biofuels. 8:1-12.
[10] Yu Xia, Yubo Wang, Herbert H.P. Fang, Tao Jin, Huanzhi Zhong, Tong Zhang*. 2015. Thermophilic microbial cellulose decomposition and methanogenesis pathways recharacterized by metatranscriptomic and metagenomic analysis. Scientific Reports. 4: 6708.
[11] Yubo Wang, Yu Xia, Feng Ju, Tong Zhang*. 2015. Metagenome approaches revealed a biological prospect for improvement on mesophilic cellulose degradation. Applied Microbiology and Biotechnology. 99:10871-10879.
2014
[12] Yanping Mao, Yu Xia, Zhiping Wang, Tong Zhang*. 2014. Reconstructing a Thauera genome from a hydrogenotrophic-denitrifying consortium using metagenomic sequence data. Applied Microbiology and Biotechnology. 98: 6885-6895.
[13] Feng Ju, Yu Xia, Feng Guo, Zhiping Wang, and Tong Zhang*. 2014. Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants. Environmental Microbiology. 16: 2421-2432.
[14] Ying Yang, Ke Yu, Yu Xia, Frankie T.K. Lau, Daniel T.W. Tang, Wingcheong Fung, Herbert H.P. Fang, Tong Zhang*. 2014. Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants. Applied Microbiology and Biotechnology. 98(12): 1-10.
[15] Yanping Mao, Ke Yu, Yu Xia, Yuanqing Chao, Tong Zhang*. 2014. Genome reconstruction and gene expression of 'Candidatus Accumulibacter phosphatis' Clade IB performing biological phosphorus removal. Environmental Science & Technology. 48:10363-71.
[16] Zhiping Wang, Feng Guo, Yanping Mao, Yu Xia, Tong Zhang*. 2014. Metabolic characteristics of a glycogen accumulating organism in Defluviicoccus cluster II revealed by comparative genomics. Microbial Ecology. 68:716-728.
2013
[17] Yu Xia, Herbert H.P. Fang, and Tong Zhang*. 2013. Recent Studies on Thermophilic anaerobic bioconversion of lignocellulosic biomass. RSC Advances. 3:15528-15542.
[18] Yu Xia, Feng Ju, Herbert H. P. Fang, and Tong Zhang*. 2013. Mining of novel thermo-stable cellulolytic genes from a thermophilic cellulose-degrading consortium by metagenomics. PLoS ONE. 8: e53779.
[19] Yanping Mao, Yu Xia, Tong Zhang*. 2013. Characterization of Thauera-dominated hydrogen-oxidizing autotrophic denitrifying microbial communities by using high-throughput sequencing. Bioresource Technology. 128:703-710.
[20] Feng Ju, Feng Guo, Lin Ye, Yu Xia, and Tong Zhang*. 2013. Metagenomic analysis on seasonal microbial variations of activated sludge from a full-Scale wastewater treatment plant over 4 years. Environmental Microbiology Reports 5(5):80-89.
2012
[21] Yu Xia, Lin Cai, Tong Zhang*, and Herbert H.P. Fang. 2012. Effects of substrate loading and co-substrates on thermophilic anaerobic conversion of microcrystalline cellulose and microbial communities revealed using high-throughput sequencing. International Journal of Hydrogen Energy. 37: 13652-13659.
[22] Yu Xia, Tong Zhang*, and Herbert H.P. Fang. 2012. Thermophilic anaerobic degradation of microcrystalline cellulose using mixed culture enriched from anaerobic digestion sludge. Procedia Environmental Sciences. 12: 3-8.
